IL_8BTK_176

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAGAG*C(PSU)A(PSU)(PSU)CUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|G|1684
8BTK|1|B5|A|1685
8BTK|1|B5|U|1686
8BTK|1|B5|U|1687
8BTK|1|B5|A|1688
8BTK|1|B5|G|1689
8BTK|1|B5|A|1690
8BTK|1|B5|G|1691
*
8BTK|1|B5|C|1717
8BTK|1|B5|PSU|1718
8BTK|1|B5|A|1719
8BTK|1|B5|PSU|1720
8BTK|1|B5|PSU|1721
8BTK|1|B5|C|1722
8BTK|1|B5|U|1723
8BTK|1|B5|C|1724

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

Ribosomal protein L10