IL_8BTK_183
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUUAAG*CCAUAC
- Length
- 12 nucleotides
- Bulged bases
- 8BTK|1|B5|U|2009
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_183 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2295
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8BTK|1|B5|G|1843
8BTK|1|B5|U|1844
8BTK|1|B5|U|1845
8BTK|1|B5|A|1846
8BTK|1|B5|A|1847
8BTK|1|B5|G|1848
*
8BTK|1|B5|C|2006
8BTK|1|B5|C|2007
8BTK|1|B5|A|2008
8BTK|1|B5|U|2009
8BTK|1|B5|A|2010
8BTK|1|B5|C|2011
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- uL30,60S ribosomal protein L7
- Chain BQ
- eL18
- Chain Be
- eL32
- Chain Bf
- 60S ribosomal protein L35a
Coloring options: