IL_8BTK_188
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8BTK|1|B5|C|1874, 8BTK|1|B5|A|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_188 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1674
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BTK|1|B5|G|1872
8BTK|1|B5|A|1873
8BTK|1|B5|C|1874
8BTK|1|B5|C|1875
8BTK|1|B5|C|1876
8BTK|1|B5|C|1877
8BTK|1|B5|A|1878
8BTK|1|B5|G|1879
8BTK|1|B5|A|1880
8BTK|1|B5|A|1881
8BTK|1|B5|A|1882
8BTK|1|B5|A|1883
*
8BTK|1|B5|U|1977
8BTK|1|B5|G|1978
8BTK|1|B5|A|1979
8BTK|1|B5|A|1980
8BTK|1|B5|A|1981
8BTK|1|B5|A|1982
8BTK|1|B5|U|1983
8BTK|1|B5|G|1984
8BTK|1|B5|G|1985
8BTK|1|B5|A|1986
8BTK|1|B5|U|1987
8BTK|1|B5|G|1988
8BTK|1|B5|G|1989
8BTK|1|B5|C|1990
8BTK|1|B5|G|1991
8BTK|1|B5|C|1992
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- Ribosomal protein L3
- Chain BI
- Ribosomal protein L10
- Chain BO
- 60S ribosomal protein L13a
- Chain Bf
- 60S ribosomal protein L35a
- Chain Bm
- Ubiquitin
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