IL_8BTK_201
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8BTK|1|B5|A|2355, 8BTK|1|B5|A|2356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_201 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1025
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8BTK|1|B5|C|2289
8BTK|1|B5|U|2290
8BTK|1|B5|G|2291
8BTK|1|B5|A|2292
8BTK|1|B5|G|2293
*
8BTK|1|B5|C|2352
8BTK|1|B5|G|2353
8BTK|1|B5|A|2354
8BTK|1|B5|A|2355
8BTK|1|B5|A|2356
8BTK|1|B5|G|2357
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- 60S ribosomal protein L8
- Chain Bg
- 60S ribosomal protein L34
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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