IL_8BTK_216

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8BTK|1|B5|G|3571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_216 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.1105

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BTK|1|B5|A|2693
8BTK|1|B5|G|2694
8BTK|1|B5|U|2695
8BTK|1|B5|C|2696
8BTK|1|B5|G|2697
8BTK|1|B5|G|2698
*
8BTK|1|B5|C|3569
8BTK|1|B5|U|3570
8BTK|1|B5|G|3571
8BTK|1|B5|U|3572

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23