IL_8BTK_217

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8BTK|1|B5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_217 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0901

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8BTK|1|B5|C|2710
8BTK|1|B5|G|2711
8BTK|1|B5|U|2712
8BTK|1|B5|A|2713
8BTK|1|B5|A|2714
8BTK|1|B5|C|2715
*
8BTK|1|B5|G|2720
8BTK|1|B5|G|2721
8BTK|1|B5|A|2722
8BTK|1|B5|U|2723
8BTK|1|B5|A|2724
8BTK|1|B5|A|2725
8BTK|1|B5|G|2726

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41

Chain Bp

eL43