IL_8BTK_223

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8BTK|1|B5|A|3395, 8BTK|1|B5|U|3411, 8BTK|1|B5|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_223 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0768

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8BTK|1|B5|C|3392
8BTK|1|B5|G|3393
8BTK|1|B5|A|3394
8BTK|1|B5|A|3395
8BTK|1|B5|G|3396
8BTK|1|B5|G|3397
*
8BTK|1|B5|U|3409
8BTK|1|B5|G|3410
8BTK|1|B5|U|3411
8BTK|1|B5|U|3412
8BTK|1|B5|G|3413
8BTK|1|B5|A|3414
8BTK|1|B5|C|3415
8BTK|1|B5|G|3416

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

60S ribosomal protein L8

Chain Bp

eL43