IL_8BTK_234

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*A(OMC)GCG

Length

18 nucleotides

Bulged bases

8BTK|1|B5|C|3523, 8BTK|1|B5|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_234 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.5137

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BTK|1|B5|C|3513
8BTK|1|B5|5MC|3514
8BTK|1|B5|A|3515
8BTK|1|B5|A|3516
8BTK|1|B5|A2M|3517
8BTK|1|B5|U|3518
8BTK|1|B5|G|3519
8BTK|1|B5|C|3520
8BTK|1|B5|C|3521
8BTK|1|B5|U|3522
8BTK|1|B5|C|3523
8BTK|1|B5|OMG|3524
8BTK|1|B5|U|3525
*
8BTK|1|B5|A|3539
8BTK|1|B5|OMC|3540
8BTK|1|B5|G|3541
8BTK|1|B5|C|3542
8BTK|1|B5|G|3543

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41