IL_8BTK_246
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAG*CGCCGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_246 not in the Motif Atlas
- Geometric match to IL_3U4M_003
- Geometric discrepancy: 0.1282
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
8BTK|1|B5|G|3702
8BTK|1|B5|G|3703
8BTK|1|B5|A|3704
8BTK|1|B5|G|3705
*
8BTK|1|B5|C|3766
8BTK|1|B5|G|3767
8BTK|1|B5|C|3768
8BTK|1|B5|C|3769
8BTK|1|B5|G|3770
8BTK|1|B5|G|3771
8BTK|1|B5|U|3772
8BTK|1|B5|G|3773
8BTK|1|B5|A|3774
8BTK|1|B5|A|3775
8BTK|1|B5|A|3776
8BTK|1|B5|U|3777
8BTK|1|B5|A|3778
8BTK|1|B5|C|3779
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Bv
- Ribosomal protein uL1
Coloring options: