IL_8BTK_254
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- U(PSU)GA(PSU)U*AA(PSU)ACA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_254 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3115
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BTK|1|B5|U|4041
8BTK|1|B5|PSU|4042
8BTK|1|B5|G|4043
8BTK|1|B5|A|4044
8BTK|1|B5|PSU|4045
8BTK|1|B5|U|4046
*
8BTK|1|B5|A|4056
8BTK|1|B5|A|4057
8BTK|1|B5|PSU|4058
8BTK|1|B5|A|4059
8BTK|1|B5|C|4060
8BTK|1|B5|A|4061
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BQ
- eL18
- Chain BT
- 60S ribosomal protein L21
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- eL42
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