IL_8BTK_278

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8BTK|1|B5|A|4454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_278 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2565

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8BTK|1|B5|G|4426
8BTK|1|B5|A|4427
8BTK|1|B5|U|4428
8BTK|1|B5|U|4429
8BTK|1|B5|A|4430
8BTK|1|B5|U|4431
*
8BTK|1|B5|A|4451
8BTK|1|B5|G|4452
8BTK|1|B5|A|4453
8BTK|1|B5|A|4454
8BTK|1|B5|U|4455
8BTK|1|B5|C|4456

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

60S ribosomal protein L13a

Chain Bm

Ubiquitin