IL_8BTK_307
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- G(PSU)UAUGGU*AACGUC
- Length
- 14 nucleotides
- Bulged bases
- 8BTK|1|A2|G|113, 8BTK|1|A2|G|114
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BTK_307 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3516
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BTK|1|A2|G|108
8BTK|1|A2|PSU|109
8BTK|1|A2|U|110
8BTK|1|A2|A|111
8BTK|1|A2|U|112
8BTK|1|A2|G|113
8BTK|1|A2|G|114
8BTK|1|A2|U|115
*
8BTK|1|A2|A|349
8BTK|1|A2|A|350
8BTK|1|A2|C|351
8BTK|1|A2|G|352
8BTK|1|A2|U|353
8BTK|1|A2|C|354
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- 40S ribosomal protein S4
- Chain Ah
- 40S ribosomal protein S8
- Chain Ak
- 40S ribosomal protein S11
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