IL_8BTK_309

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

8BTK|1|A2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_309 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1124

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8BTK|1|A2|G|145
8BTK|1|A2|G|146
8BTK|1|A2|A|147
8BTK|1|A2|U|148
8BTK|1|A2|A|149
8BTK|1|A2|A|150
8BTK|1|A2|C|151
*
8BTK|1|A2|G|167
8BTK|1|A2|C|168
8BTK|1|A2|U|169
8BTK|1|A2|A|170
8BTK|1|A2|A|171
8BTK|1|A2|OMU|172
8BTK|1|A2|A|173
8BTK|1|A2|OMC|174

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain BW

Ribosomal protein L24