IL_8BTK_314

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_314 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1731

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8BTK|1|A2|C|664
8BTK|1|A2|A|665
8BTK|1|A2|G|666
*
8BTK|1|A2|C|1163
8BTK|1|A2|C|1164
8BTK|1|A2|G|1165

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2

Chain Aw

40S ribosomal protein S23