IL_8BTK_316

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_316 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.3641

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8BTK|1|A2|A|803
8BTK|1|A2|C|804
*
8BTK|1|A2|G|861
8BTK|1|A2|A|862
8BTK|1|A2|A|863
8BTK|1|A2|PSU|864

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ag

40S ribosomal protein S7

Chain Ak

40S ribosomal protein S11

Chain Av

Ribosomal protein S15a