IL_8BTK_330

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_330 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.3099

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8BTK|1|A2|PSU|1348
8BTK|1|A2|G|1349
8BTK|1|A2|G|1350
*
8BTK|1|A2|C|1381
8BTK|1|A2|G|1382
8BTK|1|A2|A|1383

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

40S ribosomal protein SA

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2

Chain Ac

40S ribosomal protein S3

Chain Aq

40S ribosomal protein eS17