IL_8BTK_345

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUA*(PSU)(PSU)CUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_345 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.2646

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8BTK|1|B5|G|1684
8BTK|1|B5|A|1685
8BTK|1|B5|U|1686
8BTK|1|B5|U|1687
8BTK|1|B5|A|1688
*
8BTK|1|B5|PSU|1720
8BTK|1|B5|PSU|1721
8BTK|1|B5|C|1722
8BTK|1|B5|U|1723
8BTK|1|B5|C|1724

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

Ribosomal protein L10