IL_8BTK_363

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCC*GGCG

Length

7 nucleotides

Bulged bases

8BTK|1|B5|C|3891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_363 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2413

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8BTK|1|B5|C|3866
8BTK|1|B5|C|3867
8BTK|1|B5|C|3868
*
8BTK|1|B5|G|3889
8BTK|1|B5|G|3890
8BTK|1|B5|C|3891
8BTK|1|B5|G|3892

Current chains

Chain B5

28S rRNA

Nearby chains