IL_8BTK_365

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

U(PSU)GA*(PSU)ACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_365 not in the Motif Atlas

Homologous match to IL_8C3A_109

Geometric discrepancy: 0.362

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8BTK|1|B5|U|4041
8BTK|1|B5|PSU|4042
8BTK|1|B5|G|4043
8BTK|1|B5|A|4044
*
8BTK|1|B5|PSU|4058
8BTK|1|B5|A|4059
8BTK|1|B5|C|4060
8BTK|1|B5|A|4061

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BQ

eL18

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42