IL_8BTK_383

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACA*UCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BTK_383 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3511

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8BTK|1|B5|G|3678
8BTK|1|B5|A|3679
8BTK|1|B5|C|3680
8BTK|1|B5|A|3681
*
8BTK|1|B5|U|3791
8BTK|1|B5|C|3792
8BTK|1|B5|G|3793
8BTK|1|B5|U|3794

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BN

Ribosomal protein L15

Chain Bi

60S ribosomal protein L36

Chain Bv

Ribosomal protein uL1