IL_8BUU_020
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8BUU|1|A|G|848, 8BUU|1|A|G|852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BUU_020 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.0617
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BUU|1|A|G|721
8BUU|1|A|A|722
8BUU|1|A|A|723
8BUU|1|A|A|724
8BUU|1|A|C|725
*
8BUU|1|A|G|846
8BUU|1|A|A|847
8BUU|1|A|G|848
8BUU|1|A|A|849
8BUU|1|A|U|850
8BUU|1|A|A|851
8BUU|1|A|G|852
8BUU|1|A|C|853
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
Coloring options: