IL_8BUU_025

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8BUU|1|A|G|823, 8BUU|1|A|A|835, 8BUU|1|A|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_025 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0989

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8BUU|1|A|G|822
8BUU|1|A|G|823
8BUU|1|A|G|824
*
8BUU|1|A|C|834
8BUU|1|A|A|835
8BUU|1|A|A|836
8BUU|1|A|U|837
8BUU|1|A|C|838

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain S

50S ribosomal protein L22