IL_8BUU_027

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_027 not in the Motif Atlas

Homologous match to IL_7A0S_023

Geometric discrepancy: 0.3405

The information below is about IL_7A0S_023

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8BUU|1|A|G|891
8BUU|1|A|U|892
8BUU|1|A|A|893
8BUU|1|A|A|894
*
8BUU|1|A|U|979
8BUU|1|A|C|980

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L30