IL_8BUU_061

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*UGAUG

Length

9 nucleotides

Bulged bases

8BUU|1|A|U|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_061 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.1944

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8BUU|1|A|C|1515
8BUU|1|A|A|1516
8BUU|1|A|A|1517
8BUU|1|A|G|1518
*
8BUU|1|A|U|1567
8BUU|1|A|G|1568
8BUU|1|A|A|1569
8BUU|1|A|U|1570
8BUU|1|A|G|1571

Current chains

Chain A

23S rRNA

Nearby chains