IL_8BUU_086

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

8BUU|1|A|G|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_086 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.1292

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8BUU|1|A|C|2110
8BUU|1|A|A|2111
8BUU|1|A|G|2112
*
8BUU|1|A|U|2265
8BUU|1|A|G|2266
8BUU|1|A|G|2267
8BUU|1|A|G|2268

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

ExpZ

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28