IL_8BUU_090

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CAUCGGUGGGAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_090 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2555

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8BUU|1|A|G|2153
8BUU|1|A|G|2154
8BUU|1|A|A|2155
8BUU|1|A|G|2156
*
8BUU|1|A|C|2190
8BUU|1|A|A|2191
8BUU|1|A|U|2192
8BUU|1|A|C|2193
8BUU|1|A|G|2194
8BUU|1|A|G|2195
8BUU|1|A|U|2196
8BUU|1|A|G|2197
8BUU|1|A|G|2198
8BUU|1|A|G|2199
8BUU|1|A|A|2200
8BUU|1|A|U|2201
8BUU|1|A|A|2202
8BUU|1|A|C|2203

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

ExpZ