IL_8BUU_102

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8BUU|1|A|G|2605, 8BUU|1|A|A|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_102 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.098

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8BUU|1|A|C|2539
8BUU|1|A|U|2540
8BUU|1|A|C|2541
*
8BUU|1|A|G|2603
8BUU|1|A|C|2604
8BUU|1|A|G|2605
8BUU|1|A|A|2606
8BUU|1|A|G|2607

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 9

ExpZ

Chain D

50S ribosomal protein L3