IL_8BUU_114

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_114 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.0816

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

8BUU|1|A|U|2872
8BUU|1|A|G|2873
8BUU|1|A|G|2874
8BUU|1|A|A|2875
8BUU|1|A|A|2876
8BUU|1|A|G|2877
*
8BUU|1|A|U|2890
8BUU|1|A|G|2891
8BUU|1|A|G|2892
8BUU|1|A|A|2893
8BUU|1|A|G|2894

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19