IL_8BUU_142

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8BUU|1|a|A|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_142 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0812

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8BUU|1|a|C|578
8BUU|1|a|G|579
8BUU|1|a|U|580
8BUU|1|a|A|581
8BUU|1|a|A|582
8BUU|1|a|A|583
8BUU|1|a|G|584
*
8BUU|1|a|C|890
8BUU|1|a|G|891

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17