IL_8BUU_153

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_153 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8BUU|1|a|G|783
8BUU|1|a|G|784
8BUU|1|a|G|785
8BUU|1|a|A|786
8BUU|1|a|G|787
*
8BUU|1|a|U|813
8BUU|1|a|C|814

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain C

50S ribosomal protein L2

Chain k

30S ribosomal protein S11