IL_8BUU_158

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8BUU|1|a|C|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_158 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1152

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8BUU|1|a|G|943
8BUU|1|a|C|944
8BUU|1|a|A|945
*
8BUU|1|a|U|1389
8BUU|1|a|U|1390
8BUU|1|a|C|1391
8BUU|1|a|C|1392
8BUU|1|a|C|1393

Current chains

Chain a

16S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9