IL_8BUU_171

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAG*CCAAUC

Length

10 nucleotides

Bulged bases

8BUU|1|a|A|1266, 8BUU|1|a|A|1289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_171 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1468

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8BUU|1|a|G|1264
8BUU|1|a|C|1265
8BUU|1|a|A|1266
8BUU|1|a|G|1267
*
8BUU|1|a|C|1286
8BUU|1|a|C|1287
8BUU|1|a|A|1288
8BUU|1|a|A|1289
8BUU|1|a|U|1290
8BUU|1|a|C|1291

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14