IL_8BUU_174

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8BUU|1|a|C|1409, 8BUU|1|a|A|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_174 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0948

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8BUU|1|a|C|1408
8BUU|1|a|C|1409
8BUU|1|a|G|1410
*
8BUU|1|a|C|1511
8BUU|1|a|A|1512
8BUU|1|a|A|1513
8BUU|1|a|G|1514

Current chains

Chain a

16S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain u

mRNA