IL_8BUU_186

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BUU_186 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.2406

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

8BUU|1|A|G|891
8BUU|1|A|U|892
8BUU|1|A|A|893
8BUU|1|A|A|894
8BUU|1|A|G|895
*
8BUU|1|A|U|977
8BUU|1|A|A|978
8BUU|1|A|U|979
8BUU|1|A|C|980

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L30