IL_8BYV_031

3D structure

PDB id

8BYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUGC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BYV_031 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3685

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

8BYV|1|a|G|664
8BYV|1|a|U|665
8BYV|1|a|G|666
8BYV|1|a|C|667
*
8BYV|1|a|G|754
8BYV|1|a|U|755
8BYV|1|a|A|756
8BYV|1|a|A|757
8BYV|1|a|C|758

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S15