3D structure

PDB id
8C00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AAU*AU
Length
5 nucleotides
Bulged bases
8C00|1|2|A|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8C00_016 not in the Motif Atlas
Homologous match to IL_4V88_399
Geometric discrepancy: 0.1324
The information below is about IL_4V88_399
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

8C00|1|2|A|265
8C00|1|2|A|266
8C00|1|2|U|267
*
8C00|1|2|A|288
8C00|1|2|U|289

Current chains

Chain 2
18S rRNA precursor

Nearby chains

Chain S
40S ribosomal protein S4-A
Chain T
40S ribosomal protein S6-A

Coloring options:


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