IL_8C00_031

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAG*CGGAUUC

Length

12 nucleotides

Bulged bases

8C00|1|2|G|577, 8C00|1|2|U|581, 8C00|1|2|U|582

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C00|1|2|G|562
8C00|1|2|U|563
8C00|1|2|G|564
8C00|1|2|A|567
8C00|1|2|G|568
*
8C00|1|2|C|575
8C00|1|2|G|576
8C00|1|2|G|577
8C00|1|2|A|580
8C00|1|2|U|581
8C00|1|2|U|582
8C00|1|2|C|583

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain c

40S ribosomal protein S23-A

Chain t

Ribosome biogenesis protein TSR1