IL_8C00_040

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_040 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.0843

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8C00|1|2|A|865
8C00|1|2|G|866
*
8C00|1|2|C|962
8C00|1|2|A|963
8C00|1|2|U|964
8C00|1|2|U|965

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A

Chain f

40S ribosomal protein S27-A