IL_8C00_041

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8C00|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_041 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1177

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8C00|1|2|G|867
8C00|1|2|G|868
8C00|1|2|A|869
8C00|1|2|C|870
*
8C00|1|2|G|957
8C00|1|2|U|958
8C00|1|2|U|959
8C00|1|2|U|960
8C00|1|2|U|961

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain Y

40S ribosomal protein S13

Chain f

40S ribosomal protein S27-A