IL_8C00_046

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_046 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.1225

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8C00|1|2|G|985
8C00|1|2|G|986
8C00|1|2|G|987
8C00|1|2|A|988
8C00|1|2|U|989
8C00|1|2|C|990
*
8C00|1|2|G|1014
8C00|1|2|U|1015
8C00|1|2|C|1016

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain Z

40S ribosomal protein S14-A