IL_8C00_053

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_053 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.1642

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8C00|1|2|C|1173
8C00|1|2|C|1174
8C00|1|2|U|1175
*
8C00|1|2|G|1464
8C00|1|2|C|1465
8C00|1|2|G|1466

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain I

40S ribosomal protein S19-A

Chain r

Serine/threonine-protein kinase RIO2