IL_8C00_055

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUUGAAACUCAC*GGCG

Length

21 nucleotides

Bulged bases

8C00|1|2|G|1201, 8C00|1|2|A|1203

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C00|1|2|C|1180
8C00|1|2|U|1181
8C00|1|2|U|1182
8C00|1|2|A|1183
8C00|1|2|A|1184
8C00|1|2|U|1185
8C00|1|2|U|1186
8C00|1|2|U|1187
8C00|1|2|G|1201
8C00|1|2|A|1202
8C00|1|2|A|1203
8C00|1|2|A|1204
8C00|1|2|C|1205
8C00|1|2|U|1206
8C00|1|2|C|1207
8C00|1|2|A|1208
8C00|1|2|C|1209
*
8C00|1|2|G|1454
8C00|1|2|G|1455
8C00|1|2|C|1456
8C00|1|2|G|1458

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain E

40S ribosomal protein S15

Chain r

Serine/threonine-protein kinase RIO2

Chain t

Ribosome biogenesis protein TSR1