IL_8C00_061

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

8C00|1|2|U|1491, 8C00|1|2|A|1516, 8C00|1|2|U|1517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_061 not in the Motif Atlas

Homologous match to IL_4V88_460

Geometric discrepancy: 0.3568

The information below is about IL_4V88_460

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_77092.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8C00|1|2|G|1488
8C00|1|2|U|1489
8C00|1|2|C|1490
8C00|1|2|U|1491
8C00|1|2|A|1492
8C00|1|2|A|1493
8C00|1|2|C|1494
*
8C00|1|2|G|1513
8C00|1|2|U|1514
8C00|1|2|A|1515
8C00|1|2|A|1516
8C00|1|2|U|1517
8C00|1|2|C|1518

Current chains

Chain 2

18S rRNA precursor

Nearby chains