IL_8C00_063

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_063 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1343

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C00|1|2|G|1540
8C00|1|2|G|1541
8C00|1|2|G|1542
8C00|1|2|A|1543
8C00|1|2|U|1544
8C00|1|2|A|1545
*
8C00|1|2|U|1566
8C00|1|2|U|1567
8C00|1|2|C|1568
8C00|1|2|A|1569
8C00|1|2|A|1570
8C00|1|2|C|1571

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain r

Serine/threonine-protein kinase RIO2