IL_8C00_065

3D structure

PDB id

8C00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C00_065 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.3975

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8C00|1|2|C|1653
8C00|1|2|G|1654
8C00|1|2|A|1655
8C00|1|2|U|1656
*
8C00|1|2|A|1744
8C00|1|2|G|1745
8C00|1|2|A|1746
8C00|1|2|G|1747

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain t

Ribosome biogenesis protein TSR1