IL_8C01_011

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8C01|1|2|U|144, 8C01|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1286

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8C01|1|2|G|142
8C01|1|2|G|143
8C01|1|2|U|144
8C01|1|2|A|145
8C01|1|2|U|146
8C01|1|2|A|147
8C01|1|2|A|148
8C01|1|2|C|149
*
8C01|1|2|G|165
8C01|1|2|C|166
8C01|1|2|U|167
8C01|1|2|A|168
8C01|1|2|A|169
8C01|1|2|U|170
8C01|1|2|A|171
8C01|1|2|C|172

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A