IL_8C01_062

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_062 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.2685

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8C01|1|2|C|1306
8C01|1|2|U|1307
8C01|1|2|G|1308
*
8C01|1|2|C|1317
8C01|1|2|G|1318

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain C

40S ribosomal protein S17-A

Chain o

20S-pre-rRNA D-site endonuclease NOB1