IL_8C01_066

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCCAGCGA*UUGUGAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_066 not in the Motif Atlas

Homologous match to IL_4V88_459

Geometric discrepancy: 0.1385

The information below is about IL_4V88_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10447.1

Basepair signature

cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8C01|1|2|G|1480
8C01|1|2|C|1481
8C01|1|2|C|1482
8C01|1|2|A|1483
8C01|1|2|G|1484
8C01|1|2|C|1485
8C01|1|2|G|1486
8C01|1|2|A|1487
*
8C01|1|2|U|1519
8C01|1|2|U|1520
8C01|1|2|G|1521
8C01|1|2|U|1522
8C01|1|2|G|1523
8C01|1|2|A|1524
8C01|1|2|A|1525
8C01|1|2|A|1526
8C01|1|2|C|1527

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain I

40S ribosomal protein S19-A