IL_8C01_076

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C01_076 not in the Motif Atlas

Homologous match to IL_4V88_473

Geometric discrepancy: 0.0994

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8C01|1|2|C|1675
8C01|1|2|U|1676
8C01|1|2|C|1677
8C01|1|2|A|1678
*
8C01|1|2|U|1723
8C01|1|2|U|1724
8C01|1|2|U|1725
8C01|1|2|G|1726

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A