IL_8C3A_104

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUGUAGAAUAAGUG*CUACC

Length

20 nucleotides

Bulged bases

8C3A|1|1|U|2438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_95459.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

8C3A|1|1|G|2429
8C3A|1|1|G|2430
8C3A|1|1|U|2431
8C3A|1|1|G|2432
8C3A|1|1|U|2433
8C3A|1|1|A|2434
8C3A|1|1|G|2435
8C3A|1|1|A|2436
8C3A|1|1|A|2437
8C3A|1|1|U|2438
8C3A|1|1|A|2439
8C3A|1|1|A|2440
8C3A|1|1|G|2441
8C3A|1|1|U|2442
8C3A|1|1|G|2443
*
8C3A|1|1|C|2470
8C3A|1|1|U|2471
8C3A|1|1|A|2472
8C3A|1|1|C|2473
8C3A|1|1|C|2474

Current chains

Chain 1

25S

Nearby chains

Chain AJ

60S ribosomal protein L36

Chain l1

Ribosomal protein